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- DNA
   
6-frame translation [?] DNA/GC Content [?] 
- Gene Alignments
   
Blastn alignments [?] EST2Genome alignments [?] 
Blastx alignments [?] Protein2Genome alignments [?] 
- Genes
   
Gene models [?] MIRNA genes [?] 
Genes [?] SNAP genes [?] 
- MAKER Tools
   
Blastn alignments-CRINKLER [?] EST2Genome alignments-CRINKLER [?] Genes-RXLR [?]
Blastn alignments-RXLR [?] EST2Genome alignments-RXLR [?] Protein2Genome alignments-CRINKLER [?]
Blastx alignments-CRINKLER [?] Genes-CRINKLER [?] 
- Repeats
   
Transposable elements and repeats [?]  
- Small RNA
- Infection series
   
Replicate1 Replicate2 Replicate3
Mock Small RNA (Mock inf. soybean rep1) [?] Small RNA (Mock inf. soybean rep2) [?] Small RNA (Mock inf. soybean rep3) [?]
0hpi Small RNA (Inf. soybean 0 hpi rep1) [?] Small RNA (Inf. soybean 0 hpi rep2) [?] Small RNA (Inf. soybean 0 hpi rep3) [?]
3hpi Small RNA (Inf. soybean 3 hpi rep1) [?] Small RNA (Inf. soybean 3 hpi rep2) [?] Small RNA (Inf. soybean 3 hpi rep3) [?]
6hpi Small RNA (Inf. soybean 6 hpi rep1) [?] Small RNA (Inf. soybean 6 hpi rep2) [?] Small RNA (Inf. soybean 6 hpi rep3) [?]
12hpi Small RNA (Inf. soybean 12 hpi rep1) [?] Small RNA (Inf. soybean 12 hpi rep2) [?] Small RNA (Inf. soybean 12 hpi rep3) [?]
24hpi Small RNA (Inf. soybean 24 hpi rep1) [?] Small RNA (Inf. soybean 24 hpi rep2) [?] Small RNA (Inf. soybean 24 hpi rep3) [?]
48hpi Small RNA (Inf. soybean 48 hpi rep1) [?] Small RNA (Inf. soybean 48 hpi rep2) [?] Small RNA (Inf. soybean 48 hpi rep3) [?]
- Tissue series
   
Mycelium Zoospore Germinating-Cyst
OSU-rep1 Mycelium small RNA (OSU rep1) [?] Zoospore small RNA (OSU rep1) [?] Germinating cyst small RNA (OSU rep1) [?]
OSU-rep2 Mycelium small RNA (OSU rep2) [?] Zoospore small RNA (OSU rep2) [?] Germinating cyst small RNA (OSU rep2) [?]
VBI-rep1 Mycelium small RNA (VBI rep1) [?] Zoospore small RNA (VBI rep1) [?] Germinating cyst small RNA (VBI rep1) [?]
VBI-rep2 Mycelium small RNA (VBI rep2) [?] Zoospore small RNA (VBI rep2) [?] Germinating cyst small RNA (VBI rep2) [?]
- Variation
   
P. sojae vs. P. capsici conservation [?] P. sojae vs. P. ramorum conservation [?] 

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